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Étude du mécanisme de synchronisation de la réplication des deux chromosomes de Vibrio cholerae

Théophile Niault
Biochimie [q-bio.BM]. Sorbonne Université, 2023. Français. ⟨NNT : 2023SORUS121⟩
Thèse tel-04142724v1
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Chromosomal Integrons are Genetically and Functionally Isolated Units of Genomes

Paula Blanco , Filipa Trig da Roza , Laura Toribio-Celestino , Lucía García-Pastor , Niccolò Caselli , et al.
2023
Pré-publication, Document de travail pasteur-04305666v1
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Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites

Céline Loot , Gael A Millot , Egill Richard , Eloi Littner , Claire Vit , et al.
Nature Microbiology, 2024, 9 (1), pp.228-240. ⟨10.1038/s41564-023-01548-y⟩
Article dans une revue pasteur-04384854v1
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Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems

Egill Richard , Baptiste Darracq , Eloi Littner , Claire Vit , Clémence Whiteway , et al.
Science Advances , 2024, 10 (2), pp.eadj3498. ⟨10.1126/sciadv.adj3498⟩
Article dans une revue hal-04397951v1
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Genetic drivers of chromosomal integron stability

Egill Richard , Baptiste Darracq , Eloi Littner , Claire Vit , Clémence Whiteway , et al.
2022
Pré-publication, Document de travail pasteur-03824759v1
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Primary and promiscuous functions coexist during evolutionary innovation through whole protein domain acquisitions

José Antonio Escudero , Aleksandra Nivina , Harry Kemble , Céline Loot , Olivier Tenaillon , et al.
eLife, 2020, 9, pp.e58061. ⟨10.7554/eLife.58061⟩
Article dans une revue hal-03084482v1
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The coordinated replication of Vibrio cholerae ’s two chromosomes required the acquisition of a unique domain by the RctB initiator

Florian Fournes , Theophile Niault , Jakub Czarnecki , Alvise Tissier-Visconti , Didier Mazel , et al.
Nucleic Acids Research, 2021, 49 (19), pp.11119-11133. ⟨10.1093/nar/gkab903⟩
Article dans une revue hal-03500868v1
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Aminoglycoside uptake, stress, and potentiation in Gram-negative bacteria: new therapies with old molecules

Manon Lang , André Carvalho , Zeynep Baharoglu , Didier Mazel
Microbiology and Molecular Biology Reviews, 2023, ⟨10.1128/mmbr.00036-22⟩
Article dans une revue pasteur-04334889v1
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Differences in Integron Cassette Excision Dynamics Shape a Trade-Off between Evolvability and Genetic Capacitance

Céline Loot , Aleksandra Nivina , Jean Cury , José Antonio Escudero , Magaly Ducos-Galand , et al.
mBio, 2017, 8 (2), pp.e02296-16. ⟨10.1128/mBio.02296-16⟩
Article dans une revue pasteur-01689524v1
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Sleeping ribosomes: bacterial signaling triggers RaiA mediated persistence to aminoglycosides

Manon Lang , Evelyne Krin , Chloé Korlowski , Odile Sismeiro , Hugo Varet , et al.
iScience, 2021, pp.103128. ⟨10.1016/j.isci.2021.103128⟩
Article dans une revue pasteur-03349141v1

Recoding of synonymous genes to expand evolutionary landscapes requires control of secondary structure affecting translation

Jose A. Escudero , Aleksandra Nivina , Guillaume Cambray , Rocío López-Igual , Celine Loot , et al.
Biotechnology and Bioengineering, 2018, 115 (1), pp.184-191. ⟨10.1002/bit.26450⟩
Article dans une revue hal-01837317v1

Structural heterogeneity of attC integron recombination sites revealed by optical tweezers

Ann Mukhortava , Matthias Pöge , Maj Svea Grieb , Aleksandra Nivina , Céline Loot , et al.
Nucleic Acids Research, 2019, 47 (4), pp.1861-1870. ⟨10.1093/nar/gky1258⟩
Article dans une revue hal-02346822v1
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The Integron: Adaptation On Demand.

José Antonio Escudero , Céline Loot , Aleksandra Nivina , Didier Mazel
Microbiology Spectrum, 2015, 3 (2), pp.MDNA3-0019-2014. ⟨10.1128/microbiolspec.MDNA3-0019-2014⟩
Article dans une revue pasteur-01423322v1
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Cassette recruitment in the chromosomal Integron of Vibrio cholerae

Claire Vit , Egill Richard , Florian Fournes , Clémence Whiteway , Xavier Eyer , et al.
Nucleic Acids Research, 2021, 49 (10), pp.5654-5670. ⟨10.1093/nar/gkab412⟩
Article dans une revue hal-03084487v1
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β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity

A. Gutierrez , L. Laureti , S. Crussard , H. Abida , A. Rodríguez-Rojas , et al.
Nature Communications, 2013, 4, pp.1610. ⟨10.1038/ncomms2607⟩
Article dans une revue pasteur-01691736v1
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Differential Localization and Functional Specialization of parS Centromere-Like Sites in repABC Replicons of Alphaproteobacteria

Jakub Czarnecki , Elvira Chapkauskaitse , Julia Bos , Dorota Sentkowska , Paweł Wawrzyniak , et al.
Applied and Environmental Microbiology, 2022, 88 (8), pp.e0020722. ⟨10.1128/aem.00207-22⟩
Article dans une revue hal-04020359v1
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High-throughput functional profiling of the human fungal pathogen Candida albicans genome

Murielle Chauvel , Sophie Bachellier-Bassi , Anne-Marie Guérout , Keunsook K Lee , Corinne Maufrais , et al.
Research in Microbiology, 2023, 174 (3), pp.104025. ⟨10.1016/j.resmic.2022.104025⟩
Article dans une revue pasteur-04131602v1
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Belt and braces: two escape ways to maintain the cassette reservoir of large chromosomal integrons

Egill Richard , Baptiste Darracq , Eloi Littner , Gael Millot , Valentin Conte , et al.
2023
Pré-publication, Document de travail pasteur-04305445v1
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Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains

Marie Adomako , Dustin Ernst , Ryan Simkovsky , Yi-Yun Chao , Jingtong Wang , et al.
mBio, 2022, 13 (3), ⟨10.1128/mbio.00862-22⟩
Article dans une revue pasteur-04122004v1
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Measuring single-cell susceptibility to antibiotics within monoclonal bacterial populations

Lena Le Quellec , Andrey Aristov , Salomé Gutiérrez Ramos , Gabriel Amselem , Julia Bos , et al.
2023
Pré-publication, Document de travail pasteur-04098369v1
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Dynamic stepwise opening of integron attC DNA hairpins by SSB prevents toxicity and ensures functionality

Maj Svea Grieb , Aleksandra Nivina , Bevan L Cheeseman , Andreas Hartmann , Didier Mazel , et al.
Nucleic Acids Research, 2017, 45 (18), pp.10555-10563. ⟨10.1093/nar/gkx670⟩
Article dans une revue pasteur-01688527v1
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A qnr-plasmid allows aminoglycosides to induce SOS in Escherichia coli

Anamaria Babosan , David Skurnik , Anaëlle Muggeo , Gerald Pier , Zeynep Baharoglu , et al.
eLife, 2022, 11, ⟨10.7554/eLife.69511⟩
Article dans une revue hal-03919325v1
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Chromosomal Position of Ribosomal Protein Genes Affects Long-Term Evolution of Vibrio cholerae

Leticia Larotonda , Damien Mornico , Varun Khanna , Joaquín Bernal-Bayard , Jean-Marc Ghigo , et al.
mBio, 2023, 14 (2), pp.e0343222. ⟨10.1128/mbio.03432-22⟩
Article dans une revue pasteur-04567331v1
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Deficiency in cytosine DNA methylation leads to high chaperonin expression and tolerance to aminoglycosides in Vibrio cholerae

André Carvalho , Didier Mazel , Zeynep Baharoglu
PLoS Genetics, 2021, 17 (10), pp.e1009748. ⟨10.1371/journal.pgen.1009748⟩
Article dans une revue pasteur-03417428v2
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Interplay between Sublethal Aminoglycosides and Quorum Sensing: Consequences on Survival in V. cholerae

André Carvalho , Evelyne Krin , Chloé Korlowski , Didier Mazel , Zeynep Baharoglu
Cells, 2021, 10 (11), pp.3227. ⟨10.3390/cells10113227⟩
Article dans une revue pasteur-03443810v2
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Systematic transcriptome analysis allows the identification of new type I and type II Toxin/Antitoxin systems located in the superintegron of Vibrio cholerae

Evelyne Krin , Zeynep Baharoglu , Odile Sismeiro , Hugo Varet , Jean-Yves Coppée , et al.
Research in Microbiology, 2023, 174 (1-2), pp.103997. ⟨10.1016/j.resmic.2022.103997⟩
Article dans une revue pasteur-03889562v1
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A new route for integron cassette dissemination among bacterial genomes

Céline Loot , Gael A Millot , Egill Richard , Claire Vit , Baptiste Darracq , et al.
2022
Pré-publication, Document de travail pasteur-03826688v1
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Unbridled Integrons: A Matter of Host Factors

Egill Richard , Baptiste Darracq , Céline Loot , Didier Mazel
Cells, 2022, Special Issue "DNA Repair, Genome Stability/Diversity, and Oxidative Stress and Aging, from Bacteria to Human Cells: A Themed Issue in Honor of Prof. Miroslav Radman", 11 (6), pp.925. ⟨10.3390/cells11060925⟩
Article dans une revue pasteur-03610347v1
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Queuosine modification of tRNA-Tyrosine elicits translational reprogramming and enhances growth of Vibrio cholerae with aminoglycosides

Louna Fruchard , Anamaria Babosan , Andre Carvalho , Manon Lang , Blaise Li , et al.
2022
Pré-publication, Document de travail pasteur-04093412v1
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RavA‐ViaA antibiotic response is linked to Cpx and Zra2 envelope stress systems in Vibrio cholerae

Evelyne Krin , André Carvalho , Manon Lang , Anamaria Babosan , Didier Mazel , et al.
Microbiology Spectrum, In press, ⟨10.1128/spectrum.01730-23⟩
Article dans une revue pasteur-04260034v1