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Medical image segmentation automatic quality control: A multi-dimensional approach

Joris Fournel , Axel Bartoli , David Bendahan , Maxime Guye , Monique Bernard et al.
Medical Image Analysis, 2021, 74, pp.102213. ⟨10.1016/⟩
Journal articles hal-03581406v1

Using the strain-counterstrain approach to highlight the body unity within the osteopathic treatment

Badih Ghattas , Antoine Dixneuf
The American Academy of Osteopathy Journal, 2014, 24 (3), pp.23-34
Journal articles hal-03581982v1

Assessment of network module identification across complex diseases

Sarvenaz Choobdar , Mehmet Ahsen , Jake Crawford , Mattia Tomasoni , Tao Fang et al.
Nature Methods, 2019, 16 (9), pp.843-852. ⟨10.1038/s41592-019-0509-5⟩
Journal articles hal-02333148v1

Catch Me if You Can: Adaptation from Standing Genetic Variation to a Moving Phenotypic Optimum

Sebastian Matuszewski , Joachim Hermisson , Michael Kopp
Genetics, 2015, 200, pp.1255-1274
Journal articles hal-01255416v1

A Multidimensional Computerized Adaptive Short-Form Quality of Life Questionnaire Developed and Validated for Multiple Sclerosis

Pierre Michel , Karine Baumstarck , Badih Ghattas , Jean Pelletier , Anderson Loundou et al.
EBioMedicine, 2016, 95 (14), pp.e3068. ⟨10.1097/MD.0000000000003068⟩
Journal articles hal-01329887v1

VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets.

Abid Qureshi , Nishant Thakur , Isha Monga , Anamika Thakur , Manoj Kumar et al.
Database - The journal of Biological Databases and Curation, 2014, 2014 (1-10), ⟨10.1093/database/bau103⟩
Journal articles hal-01311117v1
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Mechanisms of Assortative Mating in Speciation with Gene Flow: Connecting Theory and Empirical Research

Michael Kopp , Maria Servedio , Tamra Mendelson , Rebecca Safran , Rafael Rodríguez et al.
American Naturalist, 2018, 191 (1), pp.1-20. ⟨10.1086/694889⟩
Journal articles hal-02013886v1

A robust new metric of phenotypic distance to estimate and compare multiple trait differences among populations

Rebecca J Safran , Samuel M Flaxman , Michael Kopp , Darren E Irwin , Derek Briggs et al.
Current zoology, 2012, 58 (3), pp.42-439
Journal articles hal-01266327v1
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Optimization of an in vitro chemotherapy to avoid resistant tumours

Cécile Carrère
Journal of Theoretical Biology, 2016, 413, pp.24-33. ⟨10.1016/j.jtbi.2016.11.009⟩
Journal articles hal-01302003v2

The glandular canals present in some chaetognath species are coelomoducts: Phylogenetical implication

Roxane-M. Barthelemy , Jean-Paul Casanova
International Journal of Fauna and Biological Studies, 2018
Journal articles hal-02009591v1
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Insights into the dynamic trajectories of protein filament division revealed by numerical investigation into the mathematical model of pure fragmentation

Magali Tournus , Miguel Escobedo , Wei-Feng Xue , Marie Doumic
PLoS Computational Biology, 2021, 17 (9), pp.e1008964. ⟨10.1371/journal.pcbi.1008964⟩
Journal articles hal-03131754v1
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Detecting the molecular basis of phenotypic convergence

Olivier Chabrol , Manuela Royer-Carenzi , Pierre Pontarotti , Gilles Didier
Methods in Ecology and Evolution, 2018, 9 (11), pp.2170-2180. ⟨10.1111/2041-210X.13071⟩
Journal articles hal-01532965v1
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A protocol for culturing environmental strains of the Buruli ulcer agent, Mycobacterium ulcerans

Dezemon Zingue , Arup Panda , Michel Drancourt
Scientific Reports, 2018, 8, pp.6778. ⟨10.1038/s41598-018-25278-y⟩
Journal articles hal-01791585v1
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Spectral analysis of the cerebral cortex complexity

Hamed Rabiei
Numerical Analysis [math.NA]. Aix-Marseille Université, 2017. English. ⟨NNT : ⟩
Theses tel-01881352v1
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Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships

Jon Sánchez-Valle , Hector Tejero , José María Fernández , David Juan , Beatriz Urda-García et al.
Nature Communications, 2020, 11 (1), pp.2854. ⟨10.1038/s41467-020-16540-x⟩
Journal articles inserm-02878879v1

Comparing bacterial genomes from linear orders of patterns

Frédéric Guyon , Alain Guénoche
Discrete Applied Mathematics, 2008, 156 (8), pp.1251-1262. ⟨10.1016/j.dam.2007.04.030⟩
Journal articles hal-03824543v1
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Formalizing and enriching phenotype signatures using Boolean networks

Méline Wery , Olivier Dameron , Jacques Nicolas , Elisabeth Rémy , Anne Siegel et al.
Journal of Theoretical Biology, 2019, 467, pp.66-79. ⟨10.1016/j.jtbi.2019.01.015⟩
Journal articles hal-02018724v1

Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology

Anna Niarakis , Dagmar Waltemath , James Glazier , Falk Schreiber , Sarah Keating et al.
Briefings in Bioinformatics, 2022, 23 (4), pp.1-11. ⟨10.1093/bib/bbac212⟩
Journal articles hal-03690604v1
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Criterion of positivity for semilinear problems with applications in biology

Michel Duprez , Antoine Perasso
Positivity, 2017, 21 (4), p. 1383-1392. ⟨10.1007/s11117-017-0474-0⟩
Journal articles hal-01290966v2
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Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Jouanno , Dany Severac et al.
BMC Genomics, 2016, 17 (1), pp.368. ⟨10.1186/s12864-016-2709-z⟩
Journal articles hal-01487023v1

How to interpret multidimensional quality of life questionnaires for patients with schizophrenia?

Pierre Michel , Pascal Auquier , Karine Baumstarck , Anderson Loundou , Badih Ghattas et al.
Quality of Life Research, 2015, 24 (10), ⟨10.1007/s11136-015-0982-y⟩
Journal articles hal-01297545v1

Random walk informed community detection reveals heterogeneities in the lymph node conduits network

Solène Song , Malek Senoussi , Paul Escande , Paul Villoutreix
Preprints, Working Papers, ... hal-03875947v1
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The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

Anthony Levasseur , Anne Lomascolo , Olivier Chabrol , Francisco J Ruiz-Dueñas , Eva Boukhris-Uzan et al.
BMC Genomics, 2014, 15 (1), pp.486. ⟨10.1186/1471-2164-15-486⟩
Journal articles hal-01204353v1
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Population differentiation or species formation across the Indian and the Pacific Oceans? An example from the brooding marine hydrozoan Macrorhynchia phoenicea

Bautisse Postaire , Pauline Gélin , J. Henrich Bruggemann , Marine Pratlong , Hélène Magalon et al.
Ecology and Evolution, 2017, 7 (20), pp.8170-8186. ⟨10.1002/ece3.3236⟩
Journal articles hal-01681593v1
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Sympathetic axonal sprouting induces changes in macrophage populations and protects against pancreatic cancer

Jérémy Guillot , Chloé Dominici , Adrien Lucchesi , Huyen Thi Trang Nguyen , Angélique Puget et al.
Nature Communications, 2022, 13, ⟨10.1038/s41467-022-29659-w⟩
Journal articles hal-03794776v1
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Dynamics of adaptation in an anisotropic phenotype-fitness landscape

F. Hamel , Florian LAVIGNE , Guillaume Martin , L. Roques
Nonlinear Analysis: Real World Applications, 2020, 54 (103107), pp.103107. ⟨10.1016/j.nonrwa.2020.103107⟩
Journal articles hal-02115130v1
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Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato

Kelly Brener-Raffalli , Camille Clerissi , Jeremie Vidal-Dupiol , Mehdi Adjeroud , François Bonhomme et al.
Microbiome, 2018, 6, pp.39. ⟨10.1186/s40168-018-0423-6⟩
Journal articles hal-01729372v1

An Integrative Database of β-Lactamase Enzymes: Sequences, Structures, Functions, and Phylogenetic Trees

Vivek Keshri , Seydina Diene , Adrien Estienne , Justine Dardaillon , Olivier Chabrol et al.
Antimicrobial Agents and Chemotherapy, 2019, 63 (5), ⟨10.1128/AAC.02319-18⟩
Journal articles hal-02159541v1
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Evidence for a genetic sex determination in Cnidaria, the Mediterranean red coral (Corallium rubrum)

Marine Pratlong , Anne Haguenauer , Sandrine Chenesseau , P Brener , Eve Toulza et al.
Royal Society Open Science, 2017, 4, pp.160880. ⟨10.1098/rsos.160880⟩
Journal articles hal-01480527v1

Machine Learning procedures: An application to bycatch data of the marine turtles Caretta-Caretta

Maite Pons , Soledad Marroni , Irene Machado , Badih Ghattas , Andrés Domingo et al.
Statistical Bulletin of ICCAT, 2008, 38, pp.16-28
Journal articles hal-03581993v1