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Closed and high quality bacterial genomes of the Oligo Mouse Microbiota community

 Quentin Lamy-Besnier , Romain Koszul , Laurent Debarbieux , Martial Marbouty
Microbiology Resource Announcements, 2021, 10 (17), pp.e01396-20. ⟨10.1128/MRA.01396-20⟩
Article dans une revue pasteur-03204821v1
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Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.

 Maya Spichal , Alice Brion , Sébastien Herbert , Axel Cournac , Martial Marbouty , et al.
Journal of Cell Science, 2016, 129 (4), pp.681-92. ⟨10.1242/jcs.175745⟩
Article dans une revue pasteur-01419905v1
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Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae

 Astrid Lancrey , Alexandra Joubert , Evelyne Duvernois-Berthet , Etienne Routhier , Saurabh Raj , et al.
Journal of Molecular Biology, 2022, ⟨10.1016/j.jmb.2022.167497⟩
Article dans une revue hal-03343705v2

Plasmodium falciparum population dynamics in a cohort of pregnant women in Senegal

 Juliette Guitard , Pernille Andersen , Caroline Ermont , Sédami Gnidehou , Nadine Fievet , et al.
Malaria Journal, 2010, 9 (1), pp.165. ⟨10.1186/1475-2875-9-165⟩
Article dans une revue hal-03962282v1
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High-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome

 Julian R. Garneau , Véronique Legrand , Martial Marbouty , Maximilian O. Press , Dean R. Vik , et al.
Scientific Reports, 2021, 11 (1), pp.18319. ⟨10.1038/s41598-021-97867-3⟩
Article dans une revue pasteur-03369740v1
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Genome-wide chromatin and expression datasets of various pathogenic ascomycetes

 Sébastien Bloyer , Romain Koszul
2022, pp.100014. ⟨10.24072/pci.genomics.100014⟩
Autre publication scientifique hal-03722802v1

Smc3 acetylation, Pds5 and Scc2 control the translocase activity that establishes cohesin-dependent chromatin loops

 Nathalie Bastié , Christophe Chapard , Lise Dauban , Olivier Gadal , Frederic Beckouet , et al.
Nature Structural and Molecular Biology, 2022, 29 (6), pp.575-585. ⟨10.1038/s41594-022-00780-0⟩
Article dans une revue hal-03697578v1
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MatP local enrichment delays segregation independently of tetramer formation and septal anchoring in Vibrio cholerae

 Elena Espinosa , Jihane Challita , Jean-Michel Desfontaines , Christophe Possoz , Marie-Eve Val , et al.
2024
Pré-publication, Document de travail hal-04781720v1

Metagenomes Binning Using Proximity-Ligation Data

 Martial Marbouty , Romain Koszul
Hi-C Data Analysis, 2301, Springer US, pp.163-181, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1390-0_8⟩
Chapitre d'ouvrage pasteur-03369745v1
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Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria

 Quentin Lamy-Besnier , Amaury Bignaud , Julian R Garneau , Marie Titecat , Devon E Conti , et al.
Microbiome, 2023, 11 (1), pp.111. ⟨10.1186/s40168-023-01541-x⟩
Article dans une revue pasteur-04158849v1
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Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes

 Amaury Bignaud , Charlotte Cockram , Céline Borde , Justine Groseille , Eric Allemand , et al.
Nature Structural and Molecular Biology, 2024, ⟨10.1038/s41594-023-01178-2⟩
Article dans une revue hal-04468362v1
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Exogenous chromosomes reveal how sequence composition drives chromatin assembly, activity, folding and compartmentalization

 Christophe Chapard , Léa Meneu , Jacques Serizay , Alex Westbrook , Etienne Routhier , et al.
2023
Pré-publication, Document de travail hal-04278801v1

Insight into Antigenic Diversity of VAR2CSA-DBL5ε Domain from Multiple Plasmodium falciparum Placental Isolates

 Sédami Gnidehou , Leon Jessen , Stéphane Gangnard , Caroline Ermont , Choukri Triqui , et al.
PLoS ONE, 2010, 5 (10), pp.e13105. ⟨10.1371/journal.pone.0013105⟩
Article dans une revue hal-03962279v1
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Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

 Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn , et al.
Communications Biology, 2021, 4 (1), pp.1-15. ⟨10.1038/s42003-020-01623-8⟩
Article dans une revue hal-03127732v1

Diagnosis accuracy of muscule MRI for autoimmune myopathies: Multicentric prospective study (DARWIM)

 Yves Allenbach , Guillaume Mercy , Jean-Francois Deux , Frantz Foissac , Yoland Shoindre , et al.
4th Global Conference On Myositis (GCOM 2022), Jun 2022, Prague, Czech Republic
Poster de conférence hal-03832571v1
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Rapport de conjoncture 2019 : CID 51 Modélisation mathématique, informatique et physique pour les sciences du vivant

 Franck Picard , Myriam Ferro , Alice Cleynen , Marie Doumic , Xavier Duchemin , et al.
Comité national de la recherche scientifique. 2020
Rapport hal-04360199v1
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Cohesin regulates homology search during recombinational DNA repair

 Aurèle Piazza , Hélène Bordelet , Agnès Dumont , Agnès Thierry , Jérôme Savocco , et al.
Nature Cell Biology, 2021, 23 (11), pp.1176-1186. ⟨10.1038/s41556-021-00783-x⟩
Article dans une revue hal-03427219v1
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Euryarchaeal genomes are folded into SMC-dependent loops and domains, but lack transcription-mediated compartmentalization

 Charlotte Cockram , Agnès Thierry , Aurore Gorlas , Roxane Lestini , Romain Koszul
Molecular Cell, 2021, 81 (3), pp.459-472.e10. ⟨10.1016/j.molcel.2020.12.013⟩
Article dans une revue hal-03379787v1
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Depletion or cleavage of cohesin during anaphase differentially affects chromatin structure and segregation

 Jonay Garcia-Luis , Hélène Bordelet , Agnès Thierry , Romain Koszul , Luis Aragon
eLife, 2022, 11, pp.e80147. ⟨10.7554/eLife.80147⟩
Article dans une revue pasteur-04603581v1
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La transcription, clé de voûte de l’architecture du chromosome bactérien

 Amaury Bignaud , Romain Koszul
Médecine/Sciences, 2024, 40 (5), pp.412-413. ⟨10.1051/medsci/2024057⟩
Article dans une revue hal-04596877v1
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Extended sister-chromosome catenation leads to massive reorganization of the E. coli genome

 Brenna Conin , Ingrid Billault-Chaumartin , Hafez El Sayyed , Nicole Quenech'Du , Charlotte Cockram , et al.
Nucleic Acids Research, 2022, 50 (5), pp.2635-2650. ⟨10.1093/nar/gkac105⟩
Article dans une revue pasteur-03689317v1
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Serological signatures of SARS-CoV-2 infection: Implications for antibody-based diagnostics

 Jason Rosado , Stéphane Pelleau , Charlotte Cockram , Sarah Hélène Merkling , Narimane Nekkab , et al.
2020
Pré-publication, Document de travail pasteur-02569149v2
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Absence of chromosome axis proteins recruitment prevents meiotic recombination chromosome-wide in the budding yeast Lachancea kluyveri

 Sylvain Legrand , Asma Saifudeen , Hélène Bordelet , Julien Vernerey , Arnaud Guille , et al.
2023
Pré-publication, Document de travail hal-04300727v1
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Chromosomal resolution reveals symbiotic virus colonization of parasitic wasp genomes

 Jérémy Gauthier , Hélène Boulain , Joke J.F.A. van Vugt , Lyam Baudry , Emma Persyn , et al.
2020
Pré-publication, Document de travail hal-03090838v1
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Karyotype engineering reveals spatio-temporal control of replication firing and gene contacts

 Luciana Lazar-Stefanita , Jingchuan Luo , Remi Montagne , Agnes Thierry , Xiaoji Sun , et al.
Cell Genomics, 2022, 2 (8), pp.100163. ⟨10.1016/j.xgen.2022.100163⟩
Article dans une revue hal-03930009v1
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Tethering of molecular parasites on inactive chromatin in eukaryote nucleus

 Fabien Girard
Genomics [q-bio.GN]. Sorbonne Université, 2023. English. ⟨NNT : 2023SORUS661⟩
Thèse tel-04524712v1
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Crosstalk between Hepatitis B Virus and the 3D Genome Structure

 João Diogo Dias , Nazim Sarica , Axel Cournac , Romain Koszul , Christine Neuveut
Viruses, 2022, 14 (2), pp.445. ⟨10.3390/v14020445⟩
Article dans une revue pasteur-03689314v1

Sister chromatid cohesion halts DNA loop expansion

 Nathalie Bastié , Christophe Chapard , Axel Cournac , Sanae Nejmi , Henri Mboumba , et al.
Molecular Cell, 2024, 84 (6), pp.1139-1148.e5. ⟨10.1016/j.molcel.2024.02.004⟩
Article dans une revue pasteur-04603601v1
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Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga

 Paul Simion , Jitendra Narayan , Antoine Houtain , Alessandro Derzelle , Lyam Baudry , et al.
Science Advances , 2021, 7 (41), pp.eabg4216. ⟨10.1126/sciadv.abg4216⟩
Article dans une revue hal-03406292v1
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Author Correction: Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

 Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn , et al.
Communications Biology, 2021, 4, ⟨10.1038/s42003-021-02480-9⟩
Article dans une revue hal-04686846v1
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