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Estimating the evolution history of species from genome sequences
Simon Boitard
,
Olivier Mazet
,
Bertrand Servin
Master. CIMI, Semestre mathématiques et informatique pour les sciences du vivant, 2017
Lectures
hal-02786126v1
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Environmentally Mediated Social Dilemmas
Sylvie Estrela
,
Eric Libby
,
Jeremy van Cleve
,
Florence Débarre
,
Maxime Deforet
et al.
Journal articles
hal-01941198v1
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Classification Ascendante Hiérarchique sous Contrainte de Contiguïté pour l’Analyse de données Hi-C
Nathanaël Randriamihamison
Theses
tel-03424118v2
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Impact of model assumptions on demographic inferences: the case study of two sympatric mouse lemurs in northwestern Madagascar
Helena Teixeira
,
Jordi Salmona
,
Armando Arredondo
,
Beatriz Mourato
,
Sophie Manzi
et al.
Journal articles
hal-03412689v1
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Demographic inference using genetic data from a single individual: separating population size variation from population structure
Olivier Mazet
,
Willy Rodríguez
,
Lounès Chikhi
Journal articles
hal-01087849v1
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Lymphatic Vasculature Requires Estrogen Receptor- Signaling to Protect From Lymphedema
Florent Morfoisse
,
Florence Tatin
,
Benoit Chaput
,
Nicole Therville
,
Charlotte Vaysse
et al.
Journal articles
hal-01863214v1
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Deleterious impact of feto-maternal MHC compatibility on the success of pregnancy in a macaque model
Alice Aarnink
,
Edward Mee
,
Nicolas Savy
,
Nicola Congy-Jolivet
,
Nicola Rose
et al.
Journal articles
hal-01864282v1
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Reconstitution of the Yeast RNA Polymerase III Transcription System with All Recombinant Factors
Cécile Ducrot
,
Olivier Lefebvre
,
Emilie Landrieux
,
Josee Guirouilh-Barbat
,
André Sentenac
et al.
Journal articles
hal-03048199v1
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Transformation and model choice for RNA-seq co-expression analysis
Andrea Rau
,
Cathy Maugis Rabusseau
Journal articles
hal-02624483v1
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The Structure of a Gene Co-Expression Network Reveals Biological Functions Underlying eQTLs
Nathalie Villa-Vialaneix
,
Laurence Liaubet
,
Thibault Laurent
,
Pierre Cherel
,
Adrien Gamot
et al.
PLoS ONE, 2013, pp.e60045
Journal articles
hal-00817655v1
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Exact calculation of the expected SFS in structured populations
Armando Arredondo
,
Josué M. Corujo
,
Camille Nous
,
Simon Boitard
,
Lounes Chikhi
et al.
2023
Preprints, Working Papers, ...
hal-04096859v1
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Accounting for Linkage Disequilibrium in genome scans for selection without individual genotypes : the local score approach
Maria Inès M. I. Fariello Rico
,
Simon Boitard
,
Sabine Mercier
,
Magali San Cristobal
Methods in Ecology and Evolution, May 2017, Montpellier, France
Conference papers
hal-02789038v1
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Mimicking human neuronal pathways in silico: an emergent model on the effective connectivity
Önder Gürcan
,
Kemal Türker
,
Jean-Pierre Mano
,
Carole Bernon
,
Oguz Dikenelli
et al.
Journal articles
hal-01154249v1
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Using ASICS to quantify metabolites in 1D 1H NMR spectra: an application to perinatal survival in pigs
Gaëlle Lefort
,
Laurence Liaubet
,
Patrick Tardivel
,
Cécile Canlet
,
Marie Tremblay-Franco
et al.
Journée des Plateformes BioInfo et BioStat du Génotoul, Jan 2018, Toulouse, France
Conference papers
hal-02788399v1
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Reconstructing the demographic history of populations from genomic data
Willy Rodríguez
Applications [stat.AP]. INSA Toulouse, 2016. English. ⟨NNT : ⟩
Theses
tel-01846075v1
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Sporadic and Familial Variants in NF1: An Explanation of the Wide Variability in Neurocognitive Phenotype?
Maëlle Biotteau
,
Sébastien Dejean
,
Sandrine Lelong
,
Stéphanie Iannuzzi
,
Nathalie Faure-Marie
et al.
Journal articles
hal-02614595v1
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Temporal Dynamics of Host Molecular Responses Differentiate Symptomatic and Asymptomatic Influenza A Infection.
Yongsheng Huang
,
Aimee K. Zaas
,
Arvind Rao
,
Nicolas Dobigeon
,
Peter J. Woolf
et al.
Journal articles
hal-03545137v1
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De-anonymizing Genomic Databases Using Phenotypic Traits
Mathias Humbert
,
Kévin Huguenin
,
Joachim Hugonot
,
Erman Ayday
,
Jean-Pierre Hubaux
et al.
15th Privacy Enhancing Technologies Symposium (PETS), Jun 2015, Philadelphia, PA, United States. pp.99-114, ⟨10.1515/popets-2015-0020⟩
Conference papers
hal-01151960v1
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Heterogeneity in effective size across the genome: effects on the Inverse Instantaneous Coalescence Rate (IICR) and implications for demographic inference under linked selection
Simon Boitard
,
Armando Arredondo
,
Lounès Chikhi
,
Olivier Mazet
Rencontres Alphy/AIEM, UMR6553 ECOBIO, Mar 2022, Rennes, France
Conference papers
hal-03649541v1
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Clustering of co-expressed genes
Andrea Rau
,
Marie-Laure Magniette
,
Cathy Maugis-Rabusseau
Model Choice and Model Aggregation, Editions Technip, 372 p., 2017, 9782710811770
Book sections
hal-02789928v1
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A genetic linkage map of the rat derived from recombinant inbred strains.
M Pravenec
,
D Gauguier
,
J J Schott
,
J Buard
,
V Kren
et al.
Journal articles
istex
hal-01160656v1
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Phenotypic Trait Variation as a Response to Altitude-Related Constraints in Arabidopsis Populations
Harold Duruflé
,
Philippe Ranocha
,
Duchesse Lacour Mbadinga Mbadinga
,
Sébastien Dejean
,
Maxime Bonhomme
et al.
Journal articles
hal-02115698v1
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The multi-actor PPILOW European project: a participative approach to co-build innovations for welfare improvement in organic pig and poultry farms
Cristina Micheloni
,
An Jamart
,
Martina Re
,
Laura van Vooren
,
Jarkko Niemi
et al.
Organic World Congress 2021, IFOAM, Sep 2021, Rennes, France. pp.42-43
Conference papers
hal-03629772v1
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Inferring number of populations and changes in connectivity under the n-island model
Armando Arredondo
,
Beatriz Mourato
,
Khoa Nguyen
,
Simon Boitard
,
Willy Rodríguez
et al.
Journal articles
hal-03086685v1
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Clustering transformed compositional data using K-means, with applications in gene expression and bicycle sharing system data
Antoine Godichon-Baggioni
,
Cathy Maugis-Rabusseau
,
Andrea Rau
2018
Preprints, Working Papers, ...
hal-02789763v1
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hca: an Arabidopsis mutant exhibiting unusual cambial activity and altered vascular patterning
Christophe Pineau
,
Amandine Freydier
,
Philippe Ranocha
,
Alain Jauneau
,
Simon Turner
et al.
Journal articles
hal-02678609v1
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Handling missing rows in multi-omics data integration: multiple imputation in multiple factor analysis framework
Valentin Voillet
,
Philippe Besse
,
Laurence Liaubet
,
Magali San Cristobal
,
Ignacio González
et al.
Journal articles
hal-02636549v1
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TGF-β1 and GDF5 Act Synergistically to Drive the Differentiation of Human Adipose Stromal Cells toward Nucleus Pulposus -like Cells
Pauline Colombier
,
Johann Clouet
,
Cécile Boyer
,
Maëva Ruel
,
Gaëlle Bonin
et al.
Journal articles
hal-03048645v1
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PPILOW: innovations for improving animal welfare and human well-being in low-input outdoor and organic poultry and pig production systems
Lucia Rocchi
,
Anne Collin
,
Giuditta Meloni
,
Claire Bonnefous
,
Martina Re
et al.
One Welfare World Conference, 2021, One Welfare CIC, Sep 2021, Online meeting, Spain. pp.46
Conference papers
hal-03632430v1
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Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach
Simon Boitard
,
Willy Rodríguez
,
Flora Jay
,
Stefano Mona
,
Frédéric Austerlitz
et al.
Journal articles
hal-01310742v1
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