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New tools for studying psychotherapies

Tiba Delespierre
1ères Rencontres R, Jul 2012, Bordeaux, France
Conference papers hal-00717529v1

Characterization of the replication timing program of 6 human model cell lines

Djihad Hadjadj , Thomas Denecker , Chrystelle Maric , Fabien Fauchereau , Giuseppe Baldacci et al.
Genomics Data, 2016, 9, pp.113 - 117. ⟨10.1016/j.gdata.2016.07.003⟩
Journal articles hal-01406426v1

The Cytochrome P450 3A4 has three Major Conformations: New Clues to Drug Recognition by this Promiscuous Enzyme

Lydia Benkaidali , François André , Gautier Moroy , Bahoueddine Tangour , François Maurel et al.
Molecular Informatics, 2017, 36 (10), pp.1700044. ⟨10.1002/minf.201700044⟩
Journal articles hal-02966734v1
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Modélisation des relations entre les charges d'entraînement et les pathologies infectieuses chez 28 nageurs élites durant 3 saisons

Philippe Hellard , Fanny Guimaraes , Marta Avalos , Jean-François Toussaint
4ème Symposium de l'Irmes, Biarritz, 28 oct 2009, Oct 2009, Biarritz, France. pp.2
Conference papers inserm-00541753v1
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PEPOP 2.0: new approaches to mimic non-continuous epitopes

Vincent Demolombe , Alexandre de Brevern , Liza L. Felicori , Christophe Nguyen , Ricardo Andrez Machado de Avila et al.
BMC Bioinformatics, 2019, 20 (1), ⟨10.1186/s12859-019-2867-5⟩
Journal articles hal-02277257v1
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Learning smoothing models of copy number profiles using breakpoint annotations

Toby Dylan Hocking , Gudrun Schleiermacher , Isabelle Janoueix-Lerosey , Olivier Delattre , Francis Bach et al.
2012
Preprints, Working Papers, ... hal-00663790v1
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Benchmarking the PEPOP methods for mimicking discontinuous epitopes

Vincent Demolombe , Alexandre de Brevern , Franck Molina , Géraldine Lavigne , Claude Granier et al.
BMC Bioinformatics, 2019, 20 (1), pp.738. ⟨10.1186/s12859-019-3189-3⟩
Journal articles hal-02787607v2

Topological Modelling of Deep Ulcerations in Patients with Ulcerative Colitis

Ian Morilla , Mathieu Uzzan , Dominique Cazals-Hatem , Hatem Zaag , Eric Ogier-Denis et al.
Journal of Applied Mathematics and Physics (JAMP), 2017, 05 (11), pp.2244-2261. ⟨10.4236/jamp.2017.511183⟩
Journal articles hal-02324993v1

Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation

Jean-Karim Hériché , Jon G. Lees , Ian Morilla , Thomas Walter , Boryana Petrova et al.
Molecular Biology of the Cell, 2014, 25 (16), pp.2522-2536. ⟨10.1091/mbc.E13-04-0221⟩
Journal articles hal-01101877v1
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Extension of the SAEM algorithm to left-censored data in nonlinear mixed-effects model: Application to HIV dynamics model

Adeline Samson , Marc Lavielle , France Mentré
Computational Statistics and Data Analysis, 2006, 51 (3), pp.1562-1574. ⟨10.1016/j.csda.2006.05.007⟩
Journal articles inserm-00182360v1
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Attenuation Regulation as a Term Rewriting System

Eugene Asarin , Thierry Cachat , Alexander Seliverstov , Tayssir Touili , Vassily Lyubetsky et al.
Conference on Algebraic Biology, AB'07, Jul 2007, Castle of Hagenberg (Linz), Austria. pp.81-94
Conference papers hal-00154748v1
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On restrictions of balanced 2-interval graphs

Philippe Gambette , Stéphane Vialette
33rd International Workshop on Graph-Theoretic Concepts in Computer Science (WG'07), ?, Jun 2007, Dornburg, Germany. pp.55-65, ⟨10.1007/978-3-540-74839-7_6⟩
Conference papers hal-00141338v2
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PatchSearch: a web server for off-target protein identification

Julien Rey , Inès Rasolohery , Pierre Tufféry , Frédéric Guyon , Gautier Moroy et al.
Nucleic Acids Research, 2019, 47 (W1), pp.W365-W372. ⟨10.1093/nar/gkz478⟩
Journal articles hal-03824532v1
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Biological Feedback

René Thomas , Richard d'Ari
CRC Press, Inc., pp.316, 1990
Books hal-00087681v1
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Average-case analysis of perfect sorting by reversals

Mathilde Bouvel , Cedric Chauve , Marni Mishna , Dominique Rossin
CPM'09, Jun 2009, Lille, France. pp.314-325, ⟨10.1007/978-3-642-02441-2_28⟩
Conference papers hal-00354235v1
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Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics

Hippolyte Verdier , François Laurent , Alhassan Cassé , Christian L. Vestergaard , Christian Specht et al.
PLoS Computational Biology, 2023, 19 (2), pp.e1010088. ⟨10.1371/journal.pcbi.1010088⟩
Journal articles hal-03876446v2
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Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes

Diamantis Sellis , Frédéric Guérin , Olivier Arnaiz , Walker Pett , Emmanuelle Lerat et al.
Plos Biology, 2021, 19 (7), pp.e3001309. ⟨10.1371/journal.pbio.3001309⟩
Journal articles hal-03366429v1

Gene Association Networks from Microarray Data Using a Regularized Estimation of Partial Correlation Based on the PLS Regression

Arthur Tenenhaus , Vincent Guillemot , Xavier Gidrol , Vincent Frouin
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2010, 7 (2), pp.251-262
Journal articles hal-00486420v1

CYP46A1 inhibition, brain cholesterol accumulation and neurodegeneration pave the way for Alzheimer’s disease

Sophie Ayciriex , Fathia Djelti , Jérome Braudeau , Eloise Hudry , Marc Dhenain et al.
Brain - A Journal of Neurology , 2015, 138 (8), pp.2383 - 2398. ⟨10.1093/brain/awv166⟩
Journal articles hal-01779044v1

Cellular in vivo imaging reveals coordinated regulation of pituitary microcirculation and GH cell network function.

Chrystel Lafont , Michel G Desarménien , Mathieu Cassou , François Molino , Jérôme Lecoq et al.
Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (9), pp.4465-70. ⟨10.1073/pnas.0902599107⟩
Journal articles hal-00496016v1
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Structural variations within proteins can be as large as variations observed across their homologues

Iyanar Vetrivel , Alexandre de Brevern , Frédéric Cadet , Narayanaswamy Srinivasan , Bernard Offmann et al.
Biochimie, 2019, 167, pp.162-170. ⟨10.1016/j.biochi.2019.09.013⟩
Journal articles inserm-02913845v1
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Association of an IRF5 gene functional polymorphism with Sjögren's syndrome.

Corinne Miceli-Richard , Emmanuelle Comets , Pascale Loiseau , Xavier Puechal , Eric Hachulla et al.
Arthritis and Rheumatism, 2007, 56 (12), pp.3989-94. ⟨10.1002/art.23142⟩
Journal articles inserm-00200434v1
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Regulation of Human T Helper Cell Diversity : From In Vitro Dendritic Cell-Based Mechanisms to Candidate Biomarkers in Atopic Dermatitis

Coline Trichot
Immunology. Université Paris Saclay (COmUE), 2019. English. ⟨NNT : 2019SACLS423⟩
Theses tel-03092309v1
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Halogens in Protein−Ligand Binding Mechanism: A Structural Perspective

Nicolas Shinada , Alexandre de Brevern , Peter Schmidtke
Journal of Medicinal Chemistry, 2019, 62 (21), pp.9341-9356. ⟨10.1021/acs.jmedchem.8b01453⟩
Journal articles inserm-02913756v1

Protein local conformations at the light of a structural alphabet

Alexandre de Brevern
Biophysical Journal, 2018, 114 (3), pp.231A. ⟨10.1016/j.bpj.2017.11.1286⟩
Journal articles inserm-01852960v1
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Analysis of allosteric effect of pathologic variants at the light of local protein conformations

Alexandre de Brevern
Belgrade BioInformatics Conference – BelBi 2018, Jun 2018, Belgrade, Serbia
Conference papers inserm-01853665v1
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Analysing the Structural Effect of Point Mutations of Cytotoxic Necrotizing Factor 1 (CNF1) on Lu/BCAM Adhesion Glycoprotein Association

Alexandre de Brevern
Toxins, 2018, 10 (3), pp.E122. ⟨10.3390/toxins10030122⟩
Journal articles inserm-01852766v1
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Local Structure Alphabets

Agnel Joseph , Aurélie Bornot , Alexandre de Brevern
Huzefa Rangwala, George Karypis. Introduction to Protein Structure Prediction: Methods and Algorithms, Wiley, pp.75-106, 2010, ⟨10.1002/9780470882207.ch5⟩
Book sections inserm-00557300v1
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Hybrid Protein Model (HPM)" : une nouvelle approche pour caractériser les relations séquence-structure dans les protéines

Alexandre de Brevern , Serge A. Hazout
2000, pp.105-112
Conference papers inserm-00134567v1
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Exploration of phylogenetic data using a global sequence analysis method.

Charles Chapus , Christine Dufraigne , Scott Edwards , Alain Giron , Bernard Fertil et al.
BMC Evolutionary Biology, 2005, 5, pp.63. ⟨10.1186/1471-2148-5-63⟩
Journal articles inserm-00091302v1