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RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles
Barbara Bravi
,
Jérôme Tubiana
,
Simona Cocco
,
Rémi Monasson
,
Thierry Mora
et al.
Journal articles
hal-03153691v1
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A mechanism for hunchback promoters to readout morphogenetic positional information in less than a minute
Jonathan Desponds
,
Massimo Vergassola
,
Aleksandra Walczak
Journal articles
hal-03277598v1
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Evidence for Shaping of Light Chain Repertoire by Structural Selection
Adar Toledano
,
Yuval Elhanati
,
Jennifer I C Benichou
,
Aleksandra M Walczak
,
Thierry Mora
et al.
Journal articles
hal-01833908v1
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Learning the heterogeneous hypermutation landscape of immunoglobulins from high-throughput repertoire data
Natanael Spisak
,
Aleksandra Walczak
,
Thierry Mora
Journal articles
hal-02988489v1
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Contribution of resident and circulating precursors to tumor-infiltrating CD8 + T cell populations in non-small cell lung cancer patients
Paul Gueguen
,
Christina Metoikidou
,
Thomas Dupic
,
Myriam Lawand
,
Christel Goudot
et al.
2020
Preprints, Working Papers, ...
hal-02988498v1
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Evolution and folding of repeat proteins
Ezequiel Galpern
,
Jacopo Marchi
,
Thierry Mora
,
Aleksandra Walczak
,
Diego Ferreiro
et al.
Journal articles
hal-03854601v1
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Synthetic reconstruction of the hunchback promoter specifies the role of Bicoid, Zelda and Hunchback in the dynamics of its transcription
Gonçalo Fernandes
,
Huy Tran
,
Maxime Andrieu
,
Youssoupha Diaw
,
Carmina Perez Romero
et al.
Journal articles
hal-03666554v1
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Genesis of the αβ T-cell receptor
Thomas Dupic
,
Quentin Marcou
,
Aleksandra M. Walczak
,
Thierry Mora
Journal articles
hal-02120964v1
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Capturing coevolutionary signals in repeat proteins
Rocío Espada
,
Gonzalo R. Parra
,
Thierry Mora
,
Aleksandra M Walczak
,
Diego U. Ferreiro
et al.
Journal articles
hal-01211646v1
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Active degradation of MarA controls coordination of its downstream targets
Nicholas A Rossi
,
Thierry Mora
,
Aleksandra M Walczak
,
Mary J Dunlop
Journal articles
hal-01983208v1
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Constraints and limitations on decoding positional information: the Bicoid case-study
Huy Tran
,
Aleksandra M. Walczak
,
Nathalie Dostatni
2019
Preprints, Working Papers, ...
hal-02421278v1
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How a well-adapting immune system remembers
Andreas Mayer
,
Vijay Balasubramanian
,
Aleksandra M. Walczak
,
Thierry Mora
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (18), pp.8815-8823. ⟨10.1073/pnas.1812810116⟩
Journal articles
hal-02360266v1
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Contribution of resident and circulating precursors to tumor-infiltrating CD8 + T cell populations in lung cancer
Paul Gueguen
,
Christina Metoikidou
,
Thomas Dupic
,
Myriam Lawand
,
Christel Goudot
et al.
Journal articles
hal-03877456v1
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Dissipation in Non-Steady State Regulatory Circuits
Paulina Szymańska-Rożek
,
Dario Villamaina
,
Jacek Miȩkisz
,
Aleksandra Walczak
Journal articles
hal-02988501v1
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A mechanism for hunchback promoters to readout morphogenetic positional information in less than a minute
Jonathan Desponds
,
Massimo Vergassola
,
Aleksandra Walczak
Journal articles
hal-02988492v1
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Single molecule microscopy reveals key physical features of repair foci in living cells
Judith Miné-Hattab
,
Mathias Heltberg
,
Marie Villemeur
,
Chloé Guedj
,
Thierry Mora
et al.
2020
Preprints, Working Papers, ...
hal-02988483v1
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Optimal prediction with resource constraints using the information bottleneck
Vedant Sachdeva
,
Thierry Mora
,
Aleksandra Walczak
,
Stephanie Palmer
2020
Preprints, Working Papers, ...
hal-02988475v1
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Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection
Anastasia Minervina
,
Ekaterina Komech
,
Aleksei Titov
,
Meriem Bensouda Koraichi
,
Elisa Rosati
et al.
Journal articles
hal-03367842v1
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Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires
Mikhail V. Pogorelyy
,
Yuval Elhanati
,
Quentin Marcou
,
Anastasiia L. Sycheva
,
Ekaterina A. Komech
et al.
Journal articles
hal-01579464v1
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Multi-Lineage Evolution in Viral Populations Driven by Host Immune Systems
Jacopo Marchi
,
Michael Lässig
,
Thierry Mora
,
Aleksandra M. Walczak
Journal articles
hal-02360335v1
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Immune Fingerprinting through Repertoire Similarity
Thomas Dupic
,
Meriem Bensouda Koraichi
,
Anastasia Minervina
,
Mikhail Pogorelyy
,
Thierry Mora
et al.
2020
Preprints, Working Papers, ...
hal-02988485v1
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Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies
Angela Phillips
,
Katherine Lawrence
,
Alief Moulana
,
Thomas Dupic
,
Jeffrey Chang
et al.
Journal articles
hal-03367741v1
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Size and structure of the sequence space of repeat proteins
Jacopo Marchi
,
Ezequiel A Galpern
,
Rocío Espada
,
Diego U Ferreiro
,
Aleksandra M. Walczak
et al.
Journal articles
hal-02345012v1
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OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs
Zachary Sethna
,
Yuval Elhanati
,
Curtis G Callan
,
Aleksandra M. Walczak
,
Thierry Mora
et al.
Journal articles
hal-02344638v1
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hunchback Promoters Can Readout Morphogenetic Positional Information in Less Than a Minute
Jonathan Desponds
,
Massimo Vergassola
,
Aleksandra M. Walczak
2019
Preprints, Working Papers, ...
hal-02421264v1
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Precise tracking of vaccine-responding T-cell clones reveals convergent and personalized response in identical twins
Mikhail V Pogorelyy
,
Anastasia A Minervina
,
Maximilian Puelma Touzel
,
Anastasiia L Sycheva
,
Ekaterina A Komech
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (50), pp.12704-12709. ⟨10.1073/pnas.1809642115⟩
Journal articles
hal-01974035v1
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Fierce Selection and Interference in B-Cell Repertoire Response to Chronic HIV-1
Armita Nourmohammad
,
Jakub Otwinowski
,
Marta Łuksza
,
Thierry Mora
,
Aleksandra M Walczak
et al.
Journal articles
hal-02364221v1
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Exploiting B Cell Receptor Analyses to Inform on HIV-1 Vaccination Strategies
Christoph Kreer
,
Henning Gruell
,
Thierry Mora
,
Aleksandra Walczak
,
Florian Klein
et al.
Journal articles
hal-02496965v1
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Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection
Anastasia Minervina
,
Ekaterina Komech
,
Aleksei Titov
,
Meriem Bensouda Koraichi
,
Elisa Rosati
et al.
2020
Preprints, Working Papers, ...
hal-02988479v1
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Probing T-cell response by sequence-based probabilistic modeling
Barbara Bravi
,
Vinod P Balachandran
,
Benjamin D Greenbaum
,
Aleksandra M Walczak
,
Thierry Mora
et al.
Journal articles
hal-03351495v1
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