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RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles
Barbara Bravi
,
Jérôme Tubiana
,
Simona Cocco
,
Rémi Monasson
,
Thierry Mora
et al.
Journal articles
hal-03153691v1
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A mechanism for hunchback promoters to readout morphogenetic positional information in less than a minute
Jonathan Desponds
,
Massimo Vergassola
,
Aleksandra Walczak
Journal articles
hal-03277598v1
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Learning the heterogeneous hypermutation landscape of immunoglobulins from high-throughput repertoire data
Natanael Spisak
,
Aleksandra Walczak
,
Thierry Mora
Journal articles
hal-02988489v1
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Evolution and folding of repeat proteins
Ezequiel Galpern
,
Jacopo Marchi
,
Thierry Mora
,
Aleksandra Walczak
,
Diego Ferreiro
et al.
Journal articles
hal-03854601v1
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A synaptic signal for novelty processing in the hippocampus
Ruy Gómez-Ocádiz
,
Massimiliano Trippa
,
Chun-Lei Zhang
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Lorenzo Posani
,
Simona Cocco
et al.
Journal articles
pasteur-03875609v1
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Contribution of resident and circulating precursors to tumor-infiltrating CD8 + T cell populations in lung cancer
Paul Gueguen
,
Christina Metoikidou
,
Thomas Dupic
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Myriam Lawand
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Christel Goudot
et al.
Journal articles
hal-03877456v1
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Inference of compressed Potts graphical models
Francesca Rizzato
,
Alice Coucke
,
Eleonora de Leonardis
,
J. P. P. Barton
,
Jérôme Tubiana
et al.
Journal articles
hal-02196442v2
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A mechanism for hunchback promoters to readout morphogenetic positional information in less than a minute
Jonathan Desponds
,
Massimo Vergassola
,
Aleksandra Walczak
Journal articles
hal-02988492v1
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Survival probability and size of lineages in antibody affinity maturation
Marco Molari
,
Rémi Monasson
,
Simona Cocco
2021
Preprints, Working Papers, ...
hal-02974976v2
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Parameters and determinants of responses to selection in antibody libraries
Steven Schulz
,
Sébastien Boyer
,
Matteo Smerlak
,
Simona Cocco
,
Rémi Monasson
et al.
Journal articles
hal-03190048v1
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Barriers and Dynamical Paths in Alternating Gibbs Sampling of Restricted Boltzmann Machines
Clément Roussel
,
Simona Cocco
,
Rémi Monasson
Journal articles
hal-03284805v2
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Synthetic reconstruction of the hunchback promoter specifies the role of Bicoid, Zelda and Hunchback in the dynamics of its transcription
Gonçalo Fernandes
,
Huy Tran
,
Maxime Andrieu
,
Youssoupha Diaw
,
Carmina Perez Romero
et al.
Journal articles
hal-03666554v1
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Modélisation et inférence Bayésienne pour la maturation d'affinité des anticorps
Marco Molari
Theses
tel-03267835v1
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Low-dimensional continuous attractors in recurrent neural networks : from statistical physics to computational neuroscience
Aldo Battista
Theses
tel-03203294v1
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Mutational paths with sequence-based models of proteins: from sampling to mean-field characterisation
Eugenio Mauri
,
Simona Cocco
,
Rémi Monasson
2022
Preprints, Working Papers, ...
hal-03645394v4
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Capacity-Resolution Trade-Off in the Optimal Learning of Multiple Low-Dimensional Manifolds by Attractor Neural Networks
Aldo Battista
,
Rémi Monasson
Journal articles
hal-02314069v2
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A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons
Gabriel Mahuas
,
Giulio Isacchini
,
Olivier Marre
,
Ulisse Ferrari
,
Thierry Mora
et al.
2020
Preprints, Working Papers, ...
hal-03008612v1
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Exploiting B Cell Receptor Analyses to Inform on HIV-1 Vaccination Strategies
Christoph Kreer
,
Henning Gruell
,
Thierry Mora
,
Aleksandra Walczak
,
Florian Klein
et al.
Journal articles
hal-02496965v1
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Probing T-cell response by sequence-based probabilistic modeling
Barbara Bravi
,
Vinod P Balachandran
,
Benjamin D Greenbaum
,
Aleksandra M Walczak
,
Thierry Mora
et al.
Journal articles
hal-03351495v1
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sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs
Andrea Di Gioacchino
,
Rachel Legendre
,
Yannis Rahou
,
Valérie Najburg
,
Pierre Charneau
et al.
Journal articles
pasteur-03591131v1
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The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2
Andrea Di Gioacchino
,
Petr Sulc
,
Anastassia V Komarova
,
Benjamin D Greenbaum
,
Remi Monasson
et al.
Journal articles
hal-02866680v1
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Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies
Cosimo Lupo
,
Natanael Spisak
,
Aleksandra M Walczak
,
Thierry Mora
Journal articles
hal-03854594v1
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Quantitative modeling of the effect of antigen dosage on B-cell affinity distributions in maturating germinal centers
Marco Molari
,
Klaus Eyer
,
Jean Baudry
,
Simona Cocco
,
Remi Monasson
et al.
Journal articles
hal-02935710v1
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Blind deconvolution for spike inference from fluorescence recordings
Jérôme Tubiana
,
Sébastien Wolf
,
Thomas Panier
,
Georges Debregeas
Journal articles
hal-03064793v1
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Renormalization group approach to connect discrete- and continuous-time descriptions of Gaussian processes
Federica Ferretti
,
Victor Chardès
,
Thierry Mora
,
Aleksandra Walczak
,
Irene Giardina
et al.
Journal articles
hal-03854599v1
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Antigenic waves of virus–immune coevolution
Jacopo Marchi
,
Michael Lässig
,
Aleksandra M Walczak
,
Thierry Mora
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (27), pp.e2103398118. ⟨10.1073/pnas.2103398118⟩
Journal articles
hal-03367761v1
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What are the current driving questions in immune repertoire research?
Victor Greiff
,
Eline Luning Prak
,
Tim O’donnell
,
Francesca Finotello
,
Sai Reddy
et al.
Journal articles
hal-03854592v1
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Deep generative selection models of T and B cell receptor repertoires with soNNia
Giulio Isacchini
,
Aleksandra M Walczak
,
Thierry Mora
,
Armita Nourmohammad
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (14), pp.e2023141118. ⟨10.1101/2020.11.05.370346⟩
Journal articles
hal-02991468v2
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Generative models of T-cell receptor sequences
Giulio Isacchini
,
Zachary Sethna
,
Yuval Elhanati
,
Armita Nourmohammad
,
Aleksandra Walczak
et al.
Journal articles
hal-02988458v1
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Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19
Zachary Montague
,
Huibin Lv
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Jakub Otwinowski
,
William S Dewitt
,
Giulio Isacchini
et al.
Journal articles
hal-03264272v1
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