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Genetic markers and phosphoprotein forms of beta-catenin pβ-Cat552 and pβ-Cat675 are prognostic biomarkers of cervical cancer
Suzy M Scholl
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Jonas Beal
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Leanne de Koning
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Elodie Girard
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Marina Popovic
et al.
Journal articles
hal-03492821v1
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Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Valentina Boeva
,
Caroline Louis-Brennetot
,
Agathe Peltier
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Simon Durand
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Cecile Pierre-Eugene
et al.
Journal articles
hal-01741718v1
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Variation in breast cancer risk associated with factors related to pregnancies according to truncating mutation location, in the French National BRCA1/2 carrier cohort (GENEPSO).
Julie Lecarpentier
,
Catherine Noguès
,
Emmanuelle Mouret-Fourme
,
Marion Gauthier-Villars
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Christine Lasset
et al.
Journal articles
inserm-00724092v1
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Nuclei segmentation in histopathology images using deep neural networks
Peter Naylor
,
Marik Laé
,
Fabien Reyal
,
Thomas Walter
2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), 2017, Melbourne, Australia
Conference papers
hal-01683969v1
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Segmentation of Nuclei in Histopathology Images by deep regression of the distance map
Peter Naylor
,
Marick Lae
,
Fabien Reyal
,
Thomas Walter
IEEE Transactions on Medical Imaging, 2018, pp.1-12
Journal articles
hal-01984033v1
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SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data
Bruno Zeitouni
,
Valentina Boeva
,
Isabelle Janoueix-Lerosey
,
Sophie Loeillet
,
Patricia Legoix-Né
et al.
Journal articles
inserm-00508372v1
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A generic methodological framework for studying single cell motility in high-throughput time-lapse data
Alice Schoenauer Sebag
,
Sandra Plancade
,
Céline Raulet-Tomkiewicz
,
Robert Barouki
,
Jean-Philippe Vert
et al.
Journal articles
hal-01246689v1
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A general and flexible method for signal extraction from single-cell RNA-seq data
Davide Risso
,
Fanny Perraudeau
,
Svetlana Gribkova
,
Sandrine Dudoit
,
Jean-Philippe Vert
et al.
Nature Communications, 2018, 9 (1)
Journal articles
hal-01985432v1
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Dimeric G-quadruplex motifs determine a large fraction of strong replication origins in vertebrates
Jérémy Poulet-Benedetti
,
Caroline Tonnerre-Doncarli
,
Anne-Laure Valton
,
Marc Laurent
,
Marie Gérard
et al.
Journal articles
hal-03932439v1
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A new scoring system in cancer genetics: application to criteria for BRCA1 and BRCA2 mutation screening.
Bernard Bonaïti
,
Flora Alarcon
,
Nadine Andrieu
,
Valérie Bonadona
,
Marie-Gabrielle Dondon
et al.
Journal articles
hal-00923931v1
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An autocrine ActivinB mechanism drives TGF β/Activin signaling in Group 3 medulloblastoma
Morgane Morabito
,
Magalie Larcher
,
Florence M G Cavalli
,
Chloé Foray
,
Antoine Forget
et al.
Journal articles
hal-02347105v1
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Exome sequencing reveals aberrant signalling pathways as hallmark of treatment-naive anal squamous cell carcinoma
W. Cacheux
,
V. Dangles-Marie
,
E. Rouleau
,
J. Lazartigues
,
E. Girard
et al.
Journal articles
hal-01717339v1
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National recommendations of the French Genetics and Cancer Group - Unicancer on the modalities of multi-genes panel analyses in hereditary predispositions to tumors of the digestive tract
Marion Dhooge
,
Stéphanie Baert-Desurmont
,
Carole Corsini
,
Olivier Caron
,
Nadine Andrieu
et al.
Journal articles
inserm-03182974v1
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Jarid2 Methylation via the PRC2 Complex Regulates H3K27me3 Deposition during Cell Differentiation.
Serena Sanulli
,
Neil Justin
,
Aurélie Teissandier
,
Katia Ancelin
,
Manuela Portoso
et al.
Journal articles
hal-01110498v1
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Polygenic risk scores and breast and epithelial ovarian cancer risks for carriers of BRCA1 and BRCA2 pathogenic variants
Daniel Barnes
,
Matti Rookus
,
Lesley Mcguffog
,
Goska Leslie
,
Thea Mooij
et al.
Journal articles
inserm-03193473v1
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A new hybrid record linkage process to make epidemiological databases interoperable: application to the GEMO and GENEPSO studies involving BRCA1 and BRCA2 mutation carriers
Yue Jiao
,
Fabienne Lesueur
,
Chloé-Agathe Azencott
,
Maïté Laurent
,
Noura Mebirouk
et al.
Journal articles
inserm-03313811v1
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Genomic Instability Signature of Palindromic Non-Coding Somatic Mutations in Bladder Cancer
Sophie Vacher
,
Voreak Suybeng
,
Élodie Girard
,
Julien Masliah Planchon
,
Grégory Thomson
et al.
Journal articles
hal-03011747v1
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Aurélien Naldi
,
Céline Hernandez
,
Nicolas Levy
,
Gautier Stoll
,
Pedro Monteiro
et al.
Journal articles
hal-01794294v2
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Impaired PRC2 activity promotes transcriptional instability and favors breast tumorigenesis
Michel Adam Wassef
,
Verónica Rodilla
,
Aurélie Teissandier
,
Bruno Zeitouni
,
Nadège Gruel
et al.
Journal articles
hal-02559123v1
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Autoimmunity affecting the biliary tract fuels the immunosurveillance of cholangiocarcinoma
Juliette Paillet
,
Céleste Plantureux
,
Sarah Lévesque
,
Julie Le Naour
,
Gautier Stoll
et al.
Journal articles
hal-03378827v1
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New insight for pharmacogenomics studies from the transcriptional analysis of two large-scale cancer cell line panels (vol 7, 15126, 2016)
Benjamin Sadacca
,
Anne-Sophie Hamy
,
C. Laurent
,
Pierre Gestraud
,
Hélène Bonsang-Kitzis
et al.
Journal articles
hal-02619813v1
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Role of DNA Repair Variants and Diagnostic Radiology Exams in Differentiated Thyroid Cancer Risk: A Pooled Analysis of Two Case–Control Studies
Monia Zidane
,
Thérèse Truong
,
Fabienne Lesueur
,
Constance Xhaard
,
Emilie Cordina-Duverger
et al.
Journal articles
hal-03378112v1
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Dynamical Boolean Modeling of Immunogenic Cell Death
Andrea Checcoli
,
Jonathan Pol
,
Aurelien Naldi
,
Vincent Noël
,
Emmanuel Barillot
et al.
Journal articles
hal-03050475v1
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Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)
Nicolas Levy
,
Aurélien Naldi
,
Céline Hernandez
,
Gautier Stoll
,
Denis Thieffry
et al.
Journal articles
hal-01809081v1
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Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop
Anna Niarakis
,
Martin Kuiper
,
Marek Ostaszewski
,
Rahuman Malik Sheriff
,
Cristina Casals-Casas
et al.
Journal articles
hal-02549796v1
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A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression
Jing Liu
,
Daniela Ottaviani
,
Meriem Sefta
,
Céline Desbrousses
,
Elodie Chapeaublanc
et al.
Journal articles
hal-03374490v1
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Spatial transcriptomics for respiratory research and medicine
Sandra Curras-Alonso
,
Juliette Soulier
,
Thomas Walter
,
Florian Mueller
,
Arturo Londoño-Vallejo
et al.
Journal articles
hal-03376218v1
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Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes
Yuvia A Pérez-Rico
,
Valentina Boeva
,
Allison C Mallory
,
Angelo Bitetti
,
Sara Majello
et al.
Journal articles
hal-03983132v1
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Systems biology of Ewing sarcoma: a network model of EWS-FLI1 effect on proliferation and apoptosis
Gautier Stoll
,
Didier Surdez
,
Franck Tirode
,
Karine Laud
,
Emmanuel Barillot
et al.
Journal articles
inserm-02438745v1
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BAP1 complex promotes transcription by opposing PRC1-mediated H2A ubiquitylation
Antoine Campagne
,
Ming-Kang Lee
,
Dina Zielinski
,
Audrey A. Michaud
,
Stéphanie Le Corre
et al.
Journal articles
hal-02008379v1
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